Don't worry about shot above the cup. Be more concerned about the length of the total load column and whether or not it is the right length for a good crimp.
FWIW, I've found that a good roll crimp gives me more consistent pressures from shell to shell. Ballistic Products sells a good roll crimper that fits in a drill motor or drill press. Also, if you have access to a wood lathe, make yourself a hull conditioner. That's simply a truncated cone that starts out around .410 and tapers up to 10ga. Put a pin in the center and spin it with a drill motor to condition the once fired hull mouth. The friction of the wood tool will provide all the heat you need to make real pretty roll crimped ammo.
I like roll crimped ammo for my SASS shootin'. It looks great, shoots great and has great style points.
Loading good shot shells is an art. Each scattergun is an individual and you have to learn what it likes, and doesn't.
Here's an exercise that will consume a lot of ammo and one old bed sheet. Hang the sheet up and spray a nice dot on it with spray paint. Then, stand back about the distance you think you will be shooting game at and bang away. Simply mount the gun, point and fire at the spot. Don't walk up on it. Keep on loading and shooting. Pretty soon a ragged hole will begin to appear. That's where yer scattergun is hitting. Most the time you will find that it's not the spot you were pointing at, but some place else. That's ok, now you know where your pellets are going when you shoulder yer gun and shoot by instinct. You will be surprised how many more birds fall to your gun with that information.
DD-DLoS