No, a 45-90 will have the better accuracy with 45-90 cases. There's 3 tenths of an inch difference in case length. That's 3 tenth of an inch that the bullet will have to bump up to .480 diameter and then squeeze back down to .458.
45-100 is 1/2 inch, longer 45-110 is nearly 3/4 inch longer, and the 45-120 is an inch and a tenth longer.
If a person buys a rifle with the longer chambers, then you'll just have to face the music and buy the longer cases.